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<td colspan="2"><a name="G"></a><a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-A.html">A</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-B.html">B</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-C.html">C</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-D.html">D</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-E.html">E</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-F.html">F</a>&nbsp;&nbsp;<font style="bold" size="10px" color="black">G</font>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-H.html">H</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-I.html">I</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-J.html">J</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-K.html">K</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-L.html">L</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-M.html">M</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-N.html">N</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-O.html">O</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-P.html">P</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-Q.html">Q</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-R.html">R</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-S.html">S</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-T.html">T</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-U.html">U</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-V.html">V</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-W.html">W</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-X.html">X</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-Y.html">Y</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-Z.html">Z</a>&nbsp;&nbsp;</td>
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<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/impl/class-list.html');" href="com/suckatmath/machinelearning/genetic/impl/BinaryTreeGenome.html#gene">gene</a> &mdash; Property in class com.suckatmath.machinelearning.genetic.impl.<a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/impl/class-list.html');" href="com/suckatmath/machinelearning/genetic/impl/BinaryTreeGenome.html">BinaryTreeGenome</a></td>
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<tr>
<td width="20"></td><td>
   content Gene for this node
   </td>
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<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core/class-list.html');" href="com/suckatmath/machinelearning/genetic/core/Gene.html"><i>Gene</i></a> &mdash; Interface in package <a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core/class-list.html');" href="com/suckatmath/machinelearning/genetic/core/package-detail.html">com.suckatmath.machinelearning.genetic.core</a></td>
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<tr>
<td width="20"></td><td>
 It is not necessary to use this interface if you define your own implementations of Genome, however it can be convenient
 </td>
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<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/markov/class-list.html');" href="com/suckatmath/machinelearning/markov/MarkovChain.html#generateSequence()">generateSequence</a>(max) &mdash; Method in class com.suckatmath.machinelearning.markov.<a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/markov/class-list.html');" href="com/suckatmath/machinelearning/markov/MarkovChain.html">MarkovChain</a></td>
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<tr>
<td width="20"></td><td>
   generate a sequence of tokens
   
   </td>
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<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core/class-list.html');" href="com/suckatmath/machinelearning/genetic/core/GeneticEngine.html">GeneticEngine</a> &mdash; Class in package <a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core/class-list.html');" href="com/suckatmath/machinelearning/genetic/core/package-detail.html">com.suckatmath.machinelearning.genetic.core</a></td>
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<tr>
<td width="20"></td><td>
 performs actual genetic algorithms
 </td>
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<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core/class-list.html');" href="com/suckatmath/machinelearning/genetic/core/GeneticEngine.html#GeneticEngine()">GeneticEngine</a>(f:<a href="com/suckatmath/machinelearning/genetic/core/EvolvableFactory.html" onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core./class-list.html');">com.suckatmath.machinelearning.genetic.core:EvolvableFactory</a>, mutate, crossover, npg, mprob, cparents, ccross) &mdash; Constructor in class com.suckatmath.machinelearning.genetic.core.<a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core/class-list.html');" href="com/suckatmath/machinelearning/genetic/core/GeneticEngine.html">GeneticEngine</a></td>
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<tr>
<td width="20"></td><td>
   new engine constructor
   </td>
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<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('./class-list.html');" href="./GeneticGrapher.html">GeneticGrapher</a> &mdash; Class in <a onclick="javascript:loadClassListFrame('class-list.html');" href="package-detail.html">Top Level</a></td>
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<tr>
<td width="20"></td><td>
 Example app to demonstrate genetic algorithms
 </td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('./class-list.html');" href="./GeneticGrapher.html#GeneticGrapher()">GeneticGrapher</a>() &mdash; Constructor in class <a onclick="javascript:loadClassListFrame('class-list.html');" href="GeneticGrapher.html">GeneticGrapher</a></td>
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<tr>
<td width="20"></td><td></td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/impl/class-list.html');" href="com/suckatmath/machinelearning/genetic/impl/EvolvableString.html#genome">genome</a> &mdash; Property in class com.suckatmath.machinelearning.genetic.impl.<a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/impl/class-list.html');" href="com/suckatmath/machinelearning/genetic/impl/EvolvableString.html">EvolvableString</a></td>
</tr>
<tr>
<td width="20"></td><td>
   genome used to build this EvolvableString
   </td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core/class-list.html');" href="com/suckatmath/machinelearning/genetic/core/Genome.html"><i>Genome</i></a> &mdash; Interface in package <a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core/class-list.html');" href="com/suckatmath/machinelearning/genetic/core/package-detail.html">com.suckatmath.machinelearning.genetic.core</a></td>
</tr>
<tr>
<td width="20"></td><td>
 Genome encapsulates the serialized version of your Evolvables.</td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('de/polygonal/ds/class-list.html');" href="de/polygonal/ds/Set.html#get()">get</a>(obj) &mdash; Method in class de.polygonal.ds.<a onclick="javascript:loadClassListFrame('de/polygonal/ds/class-list.html');" href="de/polygonal/ds/Set.html">Set</a></td>
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<tr>
<td width="20"></td><td>
   Reads an item from the set.</td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core/class-list.html');" href="com/suckatmath/machinelearning/genetic/core/GeneticEngine.html#getAvgPopFitness()">getAvgPopFitness</a>() &mdash; Method in class com.suckatmath.machinelearning.genetic.core.<a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core/class-list.html');" href="com/suckatmath/machinelearning/genetic/core/GeneticEngine.html">GeneticEngine</a></td>
</tr>
<tr>
<td width="20"></td><td>
   return the average fitness of the population.</td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core/class-list.html');" href="com/suckatmath/machinelearning/genetic/core/Evolvable.html#getFitness()">getFitness</a>() &mdash; Method in interface com.suckatmath.machinelearning.genetic.core.<a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core/class-list.html');" href="com/suckatmath/machinelearning/genetic/core/Evolvable.html">Evolvable</a></td>
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<tr>
<td width="20"></td><td>
   The scale of this number is arbitrary.</td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/impl/class-list.html');" href="com/suckatmath/machinelearning/genetic/impl/DefaultEvolvable.html#getFitness()">getFitness</a>() &mdash; Method in class com.suckatmath.machinelearning.genetic.impl.<a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/impl/class-list.html');" href="com/suckatmath/machinelearning/genetic/impl/DefaultEvolvable.html">DefaultEvolvable</a></td>
</tr>
<tr>
<td width="20"></td><td></td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/impl/class-list.html');" href="com/suckatmath/machinelearning/genetic/impl/EvolvableString.html#getFitness()">getFitness</a>() &mdash; Method in class com.suckatmath.machinelearning.genetic.impl.<a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/impl/class-list.html');" href="com/suckatmath/machinelearning/genetic/impl/EvolvableString.html">EvolvableString</a></td>
</tr>
<tr>
<td width="20"></td><td>
   calculates fitness, or returns saved fitness value
   uses markov chain, letter distributions, and absolute letter placement
   </td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/impl/class-list.html');" href="com/suckatmath/machinelearning/genetic/impl/ArrayGenome.html#getGenes()">getGenes</a>() &mdash; Method in class com.suckatmath.machinelearning.genetic.impl.<a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/impl/class-list.html');" href="com/suckatmath/machinelearning/genetic/impl/ArrayGenome.html">ArrayGenome</a></td>
</tr>
<tr>
<td width="20"></td><td>
   get actual genes 
   </td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core/class-list.html');" href="com/suckatmath/machinelearning/genetic/core/Evolvable.html#getGenome()">getGenome</a>() &mdash; Method in interface com.suckatmath.machinelearning.genetic.core.<a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core/class-list.html');" href="com/suckatmath/machinelearning/genetic/core/Evolvable.html">Evolvable</a></td>
</tr>
<tr>
<td width="20"></td><td>
   gets the genome used to generate this evolvable, and mutate/combine to create a new genome for next generation
   </td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/impl/class-list.html');" href="com/suckatmath/machinelearning/genetic/impl/DefaultEvolvable.html#getGenome()">getGenome</a>() &mdash; Method in class com.suckatmath.machinelearning.genetic.impl.<a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/impl/class-list.html');" href="com/suckatmath/machinelearning/genetic/impl/DefaultEvolvable.html">DefaultEvolvable</a></td>
</tr>
<tr>
<td width="20"></td><td></td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/impl/class-list.html');" href="com/suckatmath/machinelearning/genetic/impl/EvolvableString.html#getGenome()">getGenome</a>() &mdash; Method in class com.suckatmath.machinelearning.genetic.impl.<a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/impl/class-list.html');" href="com/suckatmath/machinelearning/genetic/impl/EvolvableString.html">EvolvableString</a></td>
</tr>
<tr>
<td width="20"></td><td>
   get the FixedLengthStringGenome backing
   </td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('de/polygonal/ds/class-list.html');" href="de/polygonal/ds/Collection.html#getIterator()">getIterator</a>() &mdash; Method in interface de.polygonal.ds.<a onclick="javascript:loadClassListFrame('de/polygonal/ds/class-list.html');" href="de/polygonal/ds/Collection.html">Collection</a></td>
</tr>
<tr>
<td width="20"></td><td>
   Initializes an iterator object pointing to the first item in the
   collection.</td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('de/polygonal/ds/class-list.html');" href="de/polygonal/ds/HashMap.html#getIterator()">getIterator</a>() &mdash; Method in class de.polygonal.ds.<a onclick="javascript:loadClassListFrame('de/polygonal/ds/class-list.html');" href="de/polygonal/ds/HashMap.html">HashMap</a></td>
</tr>
<tr>
<td width="20"></td><td>
   
   Initializes an iterator object pointing to the first item in the
   collection.</td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('de/polygonal/ds/class-list.html');" href="de/polygonal/ds/Set.html#getIterator()">getIterator</a>() &mdash; Method in class de.polygonal.ds.<a onclick="javascript:loadClassListFrame('de/polygonal/ds/class-list.html');" href="de/polygonal/ds/Set.html">Set</a></td>
</tr>
<tr>
<td width="20"></td><td>
   
   Initializes an iterator object pointing to the first item in the
   collection.</td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('de/polygonal/ds/class-list.html');" href="de/polygonal/ds/HashMap.html#getKeySet()">getKeySet</a>() &mdash; Method in class de.polygonal.ds.<a onclick="javascript:loadClassListFrame('de/polygonal/ds/class-list.html');" href="de/polygonal/ds/HashMap.html">HashMap</a></td>
</tr>
<tr>
<td width="20"></td><td>
   Writes all keys into an array.</td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core/class-list.html');" href="com/suckatmath/machinelearning/genetic/core/GeneticEngine.html#getPopulation()">getPopulation</a>() &mdash; Method in class com.suckatmath.machinelearning.genetic.core.<a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/core/class-list.html');" href="com/suckatmath/machinelearning/genetic/core/GeneticEngine.html">GeneticEngine</a></td>
</tr>
<tr>
<td width="20"></td><td>
   gets population.</td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/markov/class-list.html');" href="com/suckatmath/machinelearning/markov/TokenStats.html#getProbability()">getProbability</a>(t) &mdash; Method in class com.suckatmath.machinelearning.markov.<a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/markov/class-list.html');" href="com/suckatmath/machinelearning/markov/TokenStats.html">TokenStats</a></td>
</tr>
<tr>
<td width="20"></td><td>
   get probability of a token
   </td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/markov/class-list.html');" href="com/suckatmath/machinelearning/markov/TokenStats.html#getRandomToken()">getRandomToken</a>() &mdash; Method in class com.suckatmath.machinelearning.markov.<a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/markov/class-list.html');" href="com/suckatmath/machinelearning/markov/TokenStats.html">TokenStats</a></td>
</tr>
<tr>
<td width="20"></td><td>
   get a random token by weighted random choice.</td>
</tr>
<tr>
<td colspan="2" class="idxrow"><a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/impl/class-list.html');" href="com/suckatmath/machinelearning/genetic/impl/EvolvableString.html#goal">goal</a> &mdash; Static property in class com.suckatmath.machinelearning.genetic.impl.<a onclick="javascript:loadClassListFrame('com/suckatmath/machinelearning/genetic/impl/class-list.html');" href="com/suckatmath/machinelearning/genetic/impl/EvolvableString.html">EvolvableString</a></td>
</tr>
<tr>
<td width="20"></td><td>
   goal string.</td>
</tr>
<tr>
<td style="padding-bottom:20px" colspan="2"></td>
</tr>
<tr>
<td colspan="2"><a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-A.html">A</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-B.html">B</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-C.html">C</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-D.html">D</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-E.html">E</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-F.html">F</a>&nbsp;&nbsp;<font style="bold" size="10px" color="black">G</font>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-H.html">H</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-I.html">I</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-J.html">J</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-K.html">K</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-L.html">L</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-M.html">M</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-N.html">N</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-O.html">O</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-P.html">P</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-Q.html">Q</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-R.html">R</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-S.html">S</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-T.html">T</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-U.html">U</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-V.html">V</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-W.html">W</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-X.html">X</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-Y.html">Y</a>&nbsp;&nbsp;<a onclick="javascript:loadClassListFrame('index-list.html');" href="all-index-Z.html">Z</a>&nbsp;&nbsp;</td>
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